EU Commissioner for Migration Avramopoulos give a news conference in Brussels.

The European Union official in charge of migration was in Pakistan on Monday for talks after the country last week suspended a deal to accept deportations from mainland Europe.

Pakistan’s rejection of deportees comes at a time when European leaders facing an influx of migration are desperate to streamline procedures for repatriations.

Dimitris Avramopoulos, European commissioner for migration, was meeting with Pakistan’s foreign policy chief and interior minister on Monday, EU spokeswoman Ayesha Babar said in Islamabad.

She added that the one-day visit was planned in advance.

“He’s not coming just because of the statements by Pakistani officials that the country would no longer accept deportees from Europe,” she said.

EU nations signed a deal with Pakistan in 2009 allowing them to repatriate illegal immigrants and other nationalities who transited through Pakistan on their way to Europe.

But last week, Interior Minister Chaudhry Nisar said that airlines returning deportees without Pakistani permission would be penalized.

Nisar added that Pakistan would not accept any deportees accused of militant links without clear evidence of guilt.

A spokesman for the ministry later confirmed that the EU repatriation agreement was “temporarily suspended.”

The EU has not officially commented on the Pakistani decision, though Avramopoulos was scheduled to speak later on Monday.

Globally, about 90,000 people were deported back to Pakistan last year for a variety of offences, but in some cases they had been sent back without proper determination they were Pakistan nationals, the interior ministry spokesman said.

It was not immediately clear exactly how many came from Europe, although the figure is in the thousands.

Europe is facing its biggest influx of migrants in decades, with many families fleeing war in Syria, Iraq and Afghanistan.

Some European leaders are calling for tighter controls over fears of Islamic State infiltration after attacks in Paris last week killed 130 people and wounded about 200.

Pakistan’s refusal to accept deportees could slow down the removal of illegal economic migrants, making it harder to accept those genuinely fleeing persecution.

Related articles across the web

• With Quota Plan Passed, EU Leaders to Discuss Aid to Neighbors
• Court adviser deals major blow to EU-U.S. data share deal
• The Morning Risk Report: U.S.-EU Data Opinion Creates Uncertainty
• EU leaders pledge $1 billion for Syrian refugee camps
• World › Deeply-divided EU holds emergency summit on migrant crisis
• The European Union Finally Agreed On New Approach To The Refugee Crisis
• EU deal on refugees could take weeks, says Slovenian PM
• EU Cloud Legislation to Drive Over €450 Billion in GDP, Opportunity for Providers
• Inhumane Treatment of Refugees at EU Borders Shows Europe's Ugly Face
• UK plans could be part of new EU treaty, says French minister